GgaEX1036001 @ galGal4
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17552752-17553732:+
Coord C1 exon
chr7:17552752-17552772
Coord A exon
chr7:17552854-17553137
Coord C2 exon
chr7:17553683-17553732
Length
284 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTTGGAATTTCCAGAAA
3' ss Score
5.32
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATAAGTATGAGAGAGAAGCCA
Seq A exon
AAATTCTTCCAGAAAAAATGAGAGAACGGTTGAAAATAGAGGGAAGACCTTCAGAACACACAAAAATAAATATTACCAACAGTTTTTCACAGGAGAAGGAGATGTTTGAGGAAGGAGAAAAATATTGGAAGAAAAATACTGGAGATGATTCCACTTCTGAAAAAGGATATAATAAAAAACAACCAAAATGTATTGCTGACAGGCCTTGGGGTAAAAGCAACGAGGAAGAAGTTAATGTGCTAGAATCCTTCCCTGGTAGTGATGCCACTTACAGAATATTAGAG
Seq C2 exon
GTTGGTTGTGGTGCTGGAAATAGTGTATTTCCTATTTTGAAAGTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564_MULTIEX2-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.505 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134891=Methyltransf_23=PU(14.9=29.5)
C2:
PF134891=Methyltransf_23=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]