MmuEX6102069 @ mm9
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70818434-70831632:-
Coord C1 exon
chr2:70831541-70831632
Coord A exon
chr2:70819912-70820252
Coord C2 exon
chr2:70818434-70818483
Length
341 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTCTCTGTTTTAGTTA
3' ss Score
11.71
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGATCACATGCAGTGGTCTAAAGAAGAAGAAGACGCAGCTAGAAAAAAGGTAGAGGAAAACTCAGCCACACGAGTCGCTCCAGAAGAGCAAG
Seq A exon
TTAAGTTTGAAAGTGACGCTAACAAATACTGGGATATATTTTACCAGACCCATAAGAATAAGTTTTTCAAGAATCGTAATTGGCTGTTGAGGGAATTTCCTGAAATCCTTCCTGTTAATCAAAACACTAAAGAGAAAGTGGGAGAATCATCCTGGGATCAAGTCGGAAGCAGCATCTCTAGGACACAAGGAACAGAAACCCATTGTCAAGAGAGTTTTGTCTCGCCAGAACCTGGGAGCAGAGGACGGTCTGCTCCTGACCCCGACTTGGAAGAATACAGCAAAGGACCTGGGAAGACAGAGCCGTTTCCTGGTAGCAATGCCACTTTTCGAATACTAGAG
Seq C2 exon
GTTGGCTGTGGTGCTGGAAATAGCGTGTTTCCAATCCTGAACACCTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975-'4-8,'4-5,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=0.518 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF134891=Methyltransf_23=PU(15.8=26.3)
C2:
PF082417=Methyltransf_11=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: