MmuEX6102069 @ mm10
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70973253-70993575:-
Coord C1 exon
chr2:70993484-70993575
Coord A exon
chr2:70981855-70982195
Coord C2 exon
chr2:70973253-70973392
Length
341 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTCTCTGTTTTAGTTA
3' ss Score
11.71
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGATCACATGCAGTGGTCTAAAGAAGAAGAAGACGCAGCTAGAAAAAAGGTAGAGGAAAACTCAGCCACACGAGTCGCTCCAGAAGAGCAAG
Seq A exon
TTAAGTTTGAAAGTGACGCTAACAAATACTGGGATATATTTTACCAGACCCATAAGAATAAGTTTTTCAAGAATCGTAATTGGCTGTTGAGGGAATTTCCTGAAATCCTTCCTGTTAATCAAAACACTAAAGAGAAAGTGGGAGAATCATCCTGGGATCAAGTCGGAAGCAGCATCTCTAGGACACAAGGAACAGAAACCCATTGTCAAGAGAGTTTTGTCTCGCCAGAACCTGGGAGCAGAGGACGGTCTGCTCCTGACCCCGACTTGGAAGAATACAGCAAAGGACCTGGGAAGACAGAGCCGTTTCCTGGTAGCAATGCCACTTTTCGAATACTAGAG
Seq C2 exon
TCCCACGAGTCCTACAGCGAGGCCCAGTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTAGCCTACCCTTTCCCAGATGGGATCCTGGATGTCGTTCTCCTTGTCTTTGTGCTCTCATCTATCCACCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975_MULTIEX3-1/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=0.529 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082417=Methyltransf_11=PU(67.7=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGCAGTGGTCTAAAGAAGA
R:
AGGGTGGATAGATGAGAGCACA
Band lengths:
223-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types