GgaEX1037285 @ galGal4
Exon Skipping
Gene
ENSGALG00000009925 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr3:23363473-23373779:+
Coord C1 exon
chr3:23363473-23363624
Coord A exon
chr3:23364309-23364498
Coord C2 exon
chr3:23373693-23373779
Length
190 bp
Sequences
Splice sites
3' ss Seq
GAACTCATATGTCCCGGCAGGCC
3' ss Score
7.89
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
CTTCACAGTCTCACCAGTGGTACTCTTGGGGTCCTCCTAATATGCAATGTAGATTGTGTGCATCTTGTTGGATTTATTGGAAGAAATACGGTGGCCTGAAAATGCCCACACAGACAGATGAAGATAAACTCTCTTCCAGCCAACCTGCAGAG
Seq A exon
GCCACACAAGGAACTCCAGTTCGTAACACTGGAAGTCCAAAGTCAGCTGTGAAAACACGCCAAGCTTTCTTTCTTCACACAACGTGCTGGACAAAACTTGCCCGTCAGGTCTGCAAAAATACCCTTCGGCTGCGGCAGGCAGCAAGACGTCCCTTTGTTCCTATTAACTGTGCTGCCATTAAGGCAGAAT
Seq C2 exon
ATGCAGATCGGCACTATGAAATTGCTGGAAATCCTCTGAAGATCAAAAGCACCAGAAAACCACTGTCATGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925-'33-45,'33-44,35-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.275 A=0.615 C2=1.000
Domain overlap (PFAM):
C1:
PF0032022=GATA=PD(84.2=62.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACAGTCTCACCAGTGGT
R:
TACCCAATGATACATGACAGTGGT
Band lengths:
234-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]