RnoEX0056172 @ rn6
Exon Skipping
Gene
ENSRNOG00000004685 | Mta3
Description
metastasis associated 1 family, member 3 [Source:RGD Symbol;Acc:1306803]
Coordinates
chr6:7005596-7013782:+
Coord C1 exon
chr6:7005596-7005744
Coord A exon
chr6:7006422-7006562
Coord C2 exon
chr6:7013696-7013782
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTCCGCAATTGCAGGAC
3' ss Score
7.14
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CCACACAGTCTCACCAGTGGTATTCCTGGGGCCCACCTAATATGCAGTGTAGACTCTGTGCGACCTGCTGGCTGTATTGGAAAAAGTACGGAGGTCTGAAAATGCCCACGCAGACGGACGAGGAGAAGGCTCCCAGCCCTGCCGCAGAG
Seq A exon
GACCCGCGCGTGAGAAGCCACCTGTCCCGGCAGGCCTTGCAGGGCATGCCGGTCCGGAACACCGGGAGCCCCAAGTCGGCCGTGAAGACCCGCCAAGCTTTCTTCCTCCATACTACGTATTTCACAAAAATTGCTCGTCAG
Seq C2 exon
ATGCAGACAGACATGCTGAACTTTCTGGAAGCCCACTGAAAAGCAAGAGCACCAGGAAACCTTTGTCATGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004685-'18-25,'18-24,19-25
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0032022=GATA=PD(84.2=64.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACAGTCTCACCAGTGGT
R:
AAATACCCAATGATACATGACAAAGG
Band lengths:
234-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]