HsaEX1024405 @ hg38
Exon Skipping
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr2:42707903-42719074:+
Coord C1 exon
chr2:42707903-42708054
Coord A exon
chr2:42708874-42709096
Coord C2 exon
chr2:42718988-42719074
Length
223 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTCTGATTTTGCAGGAC
3' ss Score
9.45
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
CTACACAGTCTCACCAGTGGTATTCTTGGGGCCCACCTAATATGCAGTGTAGATTATGTGCAATTTGTTGGCTTTATTGGAAAAAATATGGAGGCTTGAAAATGCCCACCCAGTCAGAAGAAGAGAAGTTATCTCCTAGCCCAACTACAGAG
Seq A exon
GACCCTCGTGTTAGAAGTCACGTGTCCCGCCAGGCCATGCAGGGAATGCCAGTCCGAAACACTGGGAGTCCAAAGTCTGCAGTGAAGACCCGCCAAGCTTTCTTCCTTCATACTACATATTTCACAAAATTTGCTCGTCAGGTCTGCAAAAATACCCTCCGGCTGCGGCAGGCAGCAAGACGGCCGTTTGTTGCTATTAATTATGCTGCCATTAGGGCAGAAT
Seq C2 exon
ATGCAGACAGACATGCTGAACTATCTGGAAGTCCACTGAAAAGCAAAAGCACTAGGAAGCCTTTGGCATGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935_MULTIEX1-10/10=9-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.380 A=0.958 C2=1.000
Domain overlap (PFAM):
C1:
PF0032022=GATA=PD(84.2=62.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACAGTCTCACCAGTGGT
R:
AATACCCAATGATACATGCCAAAGG
Band lengths:
236-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains