MmuEX0029879 @ mm9
Exon Skipping
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:84190993-84199476:+
Coord C1 exon
chr17:84190993-84191141
Coord A exon
chr17:84191882-84192104
Coord C2 exon
chr17:84199390-84199476
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTTCACAATTACAGGAC
3' ss Score
8.6
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
CCACACAGTCTCATCAGTGGTATTCCTGGGGCCCACCTAACATGCAGTGTAGACTCTGCGCGACCTGTTGGCTGTATTGGAAAAAGTATGGAGGTCTGAAAATGCCTACCCAGTCAGACGAAGAGAAGTCTCCCAGCCCGACTGCAGAG
Seq A exon
GACCCGCGCGCAAGAAGCCACATGTCCCGGCAGGCCTTGCAGGGCATGCCGGTCCGGAACACCGGAAGCCCCAAGTCTGCAGTGAAGACCCGCCAAGCTTTCTTCCTTCGTACTACGTATTTCACAAAAATTGCTCGTCAGGTCTGCAAAAGCACCCTGCGGCTGCGGCAGGCAGCGAGACGGCCGTTTGTTGCTATTAATTATGCTGCCATTAGGGCAGAAT
Seq C2 exon
ATGCAGACAGACATGCCGAACTTTCTGGAAGCCCACTGAAAAGCAGAAGCACCAGGAAACCTTTGTCGTGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817-'25-21,'25-19,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.447 A=0.862 C2=0.930
Domain overlap (PFAM):
C1:
PF0032022=GATA=PD(84.2=64.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACAGTCTCATCAGTGGT
R:
CTAAATACCCAATGATACACGACAA
Band lengths:
236-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: