GgaEX1038141 @ galGal4
Exon Skipping
Gene
ENSGALG00000012984 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr28:1134686-1135340:-
Coord C1 exon
chr28:1135257-1135340
Coord A exon
chr28:1135040-1135042
Coord C2 exon
chr28:1134686-1134823
Length
3 bp
Sequences
Splice sites
3' ss Seq
GCATTGCGTGGTCCTGGCAGAAG
3' ss Score
4.53
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGGAGTATCAGTGTGATGGGTTTGTGGAGAAGAACAGAGACACCATCCCCGAGGAGCTGGTGGGGCTGCTGAGAGCCAGCAAG
Seq A exon
AAG
Seq C2 exon
TCTGCACTGCTCACTGAGCTTTTCCTGGAGGATGGGGATGGCCCCACATCCCGCAGGTCCAGCGGGCCCAGGTCCGGCCGCCCCAGCCGCAGGTCAATGCCTGGTACCCAGAAGAGCAAGAAGTCCATCTCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012984-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.663
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(0.1=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
ENSGALT00000021187fB9719
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTGATGGGTTTGTGGA
R:
TCCTCCAGGAAAAGCTCAGTGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]