RnoEX6019879 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151138420-151139233:+
Coord C1 exon
chr3:151138420-151138552
Coord A exon
chr3:151138639-151138715
Coord C2 exon
chr3:151139146-151139233
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTCTCATTATCTCTCCTAGCCG
3' ss Score
5.67
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTACCTTATAGCATTGTGGGCTGGCTGGAGAAAAACAAGGACCCCCTCAATGAGACCGTGGTCCCCATCTTCCAAAAGTCACAGAATAGGCTCTTGGCCACCCTCTATGAGAACTATGCAGGTTCTTGCTCCA
Seq A exon
CCGAGCCCCCCAAGTCTGGGGTGAAAGAGAAACGAAAGAAAGCAGCATCATTTCAGACAGTGTCTCAGCTTCACAAG
Seq C2 exon
GAGAACCTCAACAAGCTTATGACCAACCTGCGGGCCACACAGCCCCACTTCGTCCGTTGTATCGTCCCCAACGAGAACAAGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.462 C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.4=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACCCCCTCAATGAGACC
R:
GTTGGGGACGATACAACGGAC
Band lengths:
169-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]