GgaEX6022720 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2598142-2600472:-
Coord C1 exon
chr20:2600340-2600472
Coord A exon
chr20:2599765-2599841
Coord C2 exon
chr20:2598142-2598229
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCCATATTTTAACCCGACAGAGG
3' ss Score
5.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCCGTACAACATCATTGGGTGGCTGGACAAAAACAAGGACCCCCTGAATGAGACAGTGGTGGCCGTCTTTCAAAAATCCCAAAACAAGCTCCTGGCCTCTCTCTATGAGAACTATGTGGGCTCCAGCTCAG
Seq A exon
AGGAACCTCACAAACCAGGGTCCAAGGAGAAACGTAAGAAGGCAGCTTCCTTCCAAACAGTGTCCCAGCTGCACAAG
Seq C2 exon
GAGAATCTTAACAAGCTGATGACCAACCTGCGCTCCACTCAGCCCCACTTTGTCCGCTGCATCATCCCCAATGAGACAAAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.692 C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.4=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGGCTGGACAAAAACAA
R:
GGATGATGCAGCGGACAAAGT
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]