GgaEX6022720 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2953935-2956265:-
Coord C1 exon
chr20:2956133-2956265
Coord A exon
chr20:2955558-2955634
Coord C2 exon
chr20:2953935-2954022
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCCATATTTTAACCCGACAGAGG
3' ss Score
5.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCCGTACAACATCATTGGGTGGCTGGACAAAAACAAGGACCCCCTGAATGAGACAGTGGTGGCCGTCTTTCAAAAATCCCAAAACAAGCTCCTGGCCTCTCTCTATGAGAACTATGTGGGCTCCAGCTCAG
Seq A exon
AGGAACCTCACAAACCAGGGTCCAAGGAGAAACGTAAGAAGGCAGCTTCCTTCCAAACAGTGTCCCAGCTGCACAAG
Seq C2 exon
GAGAATCTTAACAAGCTGATGACCAACCTGCGCTCCACTCAGCCCCACTTTGTCCGCTGCATCATCCCCAATGAGACAAAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.692 C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.1=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGGCTGGACAAAAACAA
R:
GGATGATGCAGCGGACAAAGT
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]