HsaEX6077842 @ hg19
Exon Skipping
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33577817-33578628:+
Coord C1 exon
chr20:33577817-33577949
Coord A exon
chr20:33578037-33578113
Coord C2 exon
chr20:33578541-33578628
Length
77 bp
Sequences
Splice sites
3' ss Seq
AGGCCCCTTGTCTCTATTAGCTG
3' ss Score
4.44
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGCCTTACAGCATTGTGGGCTGGCTGGAGAAAAACAAGGATCCCCTGAATGAGACCGTGGTCCCCATCTTCCAGAAGTCACAGAATAGGCTCCTGGCGACTCTCTATGAGAATTATGCGGGCTCCTGCTCCA
Seq A exon
CTGAGCCCCCCAAGTCTGGGGTGAAAGAGAAGCGTAAGAAGGCAGCATCGTTCCAGACGGTGTCCCAGCTGCACAAG
Seq C2 exon
GAGAACCTCAACAAGCTGATGACCAACCTGCGGGCCACACAGCCCCACTTCGTCCGCTGCATTGTCCCCAACGAGAACAAAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.462 C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.4=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCCCCTGAATGAGACCG
R:
TGGGGTTTTGTTCTCGTTGGG
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)