DreEX6091846 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24967262-24968016:-
Coord C1 exon
chr11:24967884-24968016
Coord A exon
chr11:24967728-24967804
Coord C2 exon
chr11:24967262-24967349
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATACAATATTTTCTCATAGCTT
3' ss Score
5.3
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GTGCCATACAATATCATCGGTTGGCTAGACAAAAACAAAGACCCTCTGAACGAAACAGTGGTCATCTGTTTCCAGAAATCATCCAACAAGCTTCTTGCTAGTCTGTATGAGAAATACGTCAGCTCTGACTCGG
Seq A exon
CTTCTGACCCAAAAACAGGGGGCAAGGAAAAGAGAAAAAAGGCTGCCTCCTTCCAGACAGTGTCACAGCTGCACAAG
Seq C2 exon
GAAAATCTCAACAAGCTGATGACAAATTTACGAAGCACTCAGCCACATTTTGTCCGCTGCATCATTCCCAATGAAACCAAAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'18-21,'18-19,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.654 C2=0.040
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.4=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTGAACGAAACAGTGG
R:
TCATTGGGAATGATGCAGCGG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]