GgaEX1040097 @ galGal3
Exon Skipping
Gene
ENSGALG00000002922 | NOTCH2
Description
NA
Coordinates
chr8:4255098-4256694:+
Coord C1 exon
chr8:4255098-4255240
Coord A exon
chr8:4255518-4255728
Coord C2 exon
chr8:4256598-4256694
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACTTCACTTGGAACTTCTAGGCG
3' ss Score
4.87
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CACGAGGGTGTTCCTAGAGATTGACAACCGTCAGTGTGCAGAAGATTCAGAGCAATGCTTTCACAACACAGAAGCTGCTGCAGCCCTCTTAGCTGCTCAGGCAATCAAGGGCATGTTGCCTTATCCTTTTGTGTCTGTCCAAA
Seq A exon
GCGAACCCTTGTTACCACCGAAGACCCAGTTGCTCTACCTACTCGCCGTGGCAGCTCTGATCATCCTCTTGATTCTTCTCTTGGGTGTGATGATGGCAAAGCGTAAGCGCAAGCACGGTTCCCTGTGGCTCCCGGAGGGCTTTATTCTGCGCAGGGATCCCAGTAATCATAAGCGCAGGGAGCCAGTTGGAGAAGATGCAGTTGGACTCAA
Seq C2 exon
AAATCTATCAGTCCAGATACCAGAGGGTAACATGGCAGATTCTGGACCAACTGAACACTGGGCAGGTGATGGTGGACCTCAGCCAAAGAGGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922-'32-43,'32-42,34-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.186 C2=0.818
Domain overlap (PFAM):
C1:
PF076847=NODP=FE(78.7=100),PF039189=CcmH=PU(9.8=10.2)
A:
PF076847=NODP=PD(14.8=12.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTTCCTAGAGATTGACAACC
R:
CTCTTTGGCTGAGGTCCACCA
Band lengths:
228-439
Functional annotations
There are 1 annotated functions for this event
PMID: 16530045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: inferred by author. ELM ID: ELMI002958; ELM sequence: LWLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]