GgaEX1043797 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1589719-1590888:-
Coord C1 exon
chr26:1590746-1590888
Coord A exon
chr26:1589989-1590177
Coord C2 exon
chr26:1589719-1589812
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTGCTGCTGCTGCAGGTT
3' ss Score
7.08
5' ss Seq
CACGTAAGC
5' ss Score
6.58
Exon sequences
Seq C1 exon
ATCGATTTCCCCACCTCTGCCTTCGACGTGAAGTTTGTGAGCCCGCTGGCGGCCGACGTGAGCCCCAAGTACGAATTTGGCAGCCTGGGTGAGGAGGACCAGCGCAGGCTGCGGGAGGCGATGCAGAAGAAATCGCTCTATTG
Seq A exon
GTTGACAGATGCAGACCGCAAACGGCTGTGGGAGAAGCGCTACTACTGCCACGCGGCACCCGGCTCGCTGCCCATGCTGCTGGCCAGTGCACCCAGCTGGGAGTGGGCCTGCCTGCCTGACATCTACGCCCTGCTGAGCCAGTGGACCTACATGAGCCACCAGGATGCCCTGGGGCTCCTTCATGCCAC
Seq C2 exon
GTTCCCAGACCAGGAGGTGAGGAGGACGGCCGTGCAGTGGATCGACTCCATCTCTGACACGGAGCTGCTGGACTACCTGCCCCAGCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(11.5=43.8)
A:
PF0061315=PI3Ka=FE(34.4=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTCCCCACCTCTGCCTTC
R:
GCTGGGGCAGGTAGTCCA
Band lengths:
226-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]