MmuEX6027399 @ mm10
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:133086937-133090059:+
Coord C1 exon
chr1:133086937-133087079
Coord A exon
chr1:133088188-133088376
Coord C2 exon
chr1:133089966-133090059
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGCCGCTCGCTCTCACGTAGGCT
3' ss Score
7.26
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATTGACTTCCCCAGCTCGGCCTTTGACATCAAGTTCACCAGCCCCCCTGGAGACAAGTTCAGCCCCCGCTATGAGTTTGGCAGTCTCCGGGAGGAGGACCAGCGCAAACTTAAAGACATTACGCAGAAGGAGTCCCTATACTG
Seq A exon
GCTCACGGATGCTGACAAGAAGCAGCTGTGGGAGAAACGCTATTACTGCCACACTGAGGTGAGCTCACTCCCCCTGGTTCTCGCCAGTGCACCCAGCTGGGAGTGGGCTTGCCTGCCGGACATCTATGCTCTCCTGCAACAGTGGACTCACATGAACCACCAAGATGCCCTGGGACTCCTGCATGCCAC
Seq C2 exon
CTTCCCGGACCAGGAGGTGCGGCGGATGGCCGTGCAGTGGATCGGCTCCCTCTCAGATGCGGAGCTGCTGGACTACCTGCCCCAGCTAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'30-24,'30-22,34-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(11.5=43.8)
A:
PF0061315=PI3Ka=FE(34.4=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
ENSMUST00000077730fB3006
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACTTCCCCAGCTCGGC
R:
TGGACTAGCTGGGGCAGGTA
Band lengths:
236-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types