RnoEX6044090 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49890283-49893282:+
Coord C1 exon
chr13:49890283-49890425
Coord A exon
chr13:49891538-49891726
Coord C2 exon
chr13:49893189-49893282
Length
189 bp
Sequences
Splice sites
3' ss Seq
GCCACTCTCTCTCTCCCTAGGCT
3' ss Score
13.08
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATTGACTTCCCCACCTCGGCCTTTGACATCAAGTTCACCAGCCCCCCTGGAGACAAGTTCAGCCCCCGCTATGAGTTTGGCAGTCTCCGGGAGGAGGACCAGCGCAAACTTAAAGACATTACGCAGAAGGAGTCCCTTTACTG
Seq A exon
GCTCTCTGATGCCGACAAGAAGCAACTGTGGGAGAAGCGCTATTACTGCCACACTGAGGTGAGCTCGCTCCCCTTGGTGCTCGCCAGTGCACCCAGCTGGGAGTGGGCTTGCCTGCCGGACATCTATGCTCTCCTGCAACAGTGGACTCACATGAACCACCAGGATGCCCTGGGACTCCTGCATGCCAC
Seq C2 exon
CTTCCCGGACCAGGAGGTGCGGCGCATGGCCGTGCAGTGGATCGGCTCCCTCTCGGATGCTGAGCTGTTGGACTACCTGCCCCAGCTAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'27-25,'27-24,29-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(11.5=43.8)
A:
PF0061315=PI3Ka=FE(34.4=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACTTCCCCACCTCGGC
R:
CTGTACTAGCTGGGGCAGGTA
Band lengths:
237-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]