GgaEX1043807 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64133608-64144929:+
Coord C1 exon
chr1:64133608-64134264
Coord A exon
chr1:64141172-64141254
Coord C2 exon
chr1:64144772-64144929
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCTGTGTTTTTAGGTT
3' ss Score
11.22
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TTTATGGTTCATCACACTTACATCATCCTGAAGAACATTTTTTCTCATCAGATATCTTTAGTCTAAATGTGCCAGAACAGCAGCTTTGCAGTCAGCCTTCAGTTGCTTGTGGTGAACTTCACTCTGAAAATTTTGTACCTCACTGGCAACAAGGCACAGTGTCACCACACATAGGTTTCAAGTCGTCCTTACTGTCTGATGATGGAAACTTCTCTCTGGTGGATTCTTACCCATATAATCAAGAGAGAGAAATCTACAGATGGAATAGTTCAACTCCAGTCCCAAATGTGCTTAATTCAAATGTGGAGAGAGGCTATGCCTATTGGAATTTTCAGATAGGTTTTGATAATGTAGATGCTCAATGTCCTGTTTTCTTGGACAAATATCCATTTGGACAAAGGAGAGATGAAAGTGGAAATGGGGAAGCCTGTTTAACCAATACTTCCAGAAGATTCAGCATAGGATCTACCTGGCCAAAAAGCCCTGGACATGACAGAGAG
Seq A exon
GTTACAGGTTGGTCTATCCAGCTGATTAAGGCAAATCAAGGGAGTAACGAAAATGCAGTTTCTTTTTGCAATACAGTGGAGAA
Seq C2 exon
GATAAGAAACACCTACCCTGCTTGTGATTTGAAGACAAACACTGGGAAGATCTGGAGTGTTGCAACAAAGTTCCCAGACCACATTCTGGGTAAAATAAGACTCAGAATCAGCATCTGGACAGATTCTTCACCATCTCCTCTGCTTCTTACACAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(34.0=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAATGGGGAAGCCTGTT
R:
TGGTCTGGGAACTTTGTTGCA
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]