RnoEX0065968 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173769445-173776882:+
Coord C1 exon
chr4:173769445-173770197
Coord A exon
chr4:173773427-173773509
Coord C2 exon
chr4:173776725-173776882
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTAGCGATTTTTACTTCCAGCCC
3' ss Score
6
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAGGCACGTGTTTTGTACCAGATACACCAAACTTGGATTCAAAATGGCAATCCATATATGGACCCCACCCAAGGCACTTCAATGAATTCACTTCTCAGAGTCCCCACTTCTCCCAGCTTCCTTTTGGAAAAGCATCAGCCATTGGTTTTAATCCTGCTGTATTACCTGCACATCAGTTCATTCATGAGGGAGCCTCCTGGAGAAATCCCACAAGAAAATATCATGGTGGTGAGGATCCCAGGTTCAGTGCTCTAACTCCGTCATCCACTGGCTTGGATAAATGTCATCAACAAGGACAATCAGGGACCGAACATTGTAACTATTATGTGGAACTTGAAAACAATATTCCCCATCATTATTCACCCTACTCAATGGACTCCATACCCGATAGTGAGGAAAAAGGAAGTGGAGATGCGGATCTTGTAGAACCTTCTCTGGTGTTCTCTAAAGACTCCTTTCTACCCAGGGCATCGGAGAACATGTCAGTGGAAAGCACAGAG
Seq A exon
CCCATTGGTTGCCCCCTTGAAATAGTTGAAGCACCCCAAGGGAGTAACAAGAGCCTCGCCTCCTTTTGCAACAATGTAACAAA
Seq C2 exon
AATAAGAGGACTATATCATGCAAGTGACACTAATTCCAATTCCGGAAAGATCTGGGCCATCACCACAGCCTATCCATCTCGGCTCTTCGCTGACACCCAGTTCAGAGTTAAAATTTCCACTGATAACTCGGCACAACTTCTTCTTCTTAAGCCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'3-3,'3-2,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(32.3=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTGGAGATGCGGATCT
R:
CCGAGATGGATAGGCTGTGGT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]