MmuEX6007667 @ mm10
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139621812-139629875:+
Coord C1 exon
chr6:139621812-139622565
Coord A exon
chr6:139626496-139626578
Coord C2 exon
chr6:139629718-139629875
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTAGCAATTTTTACTTCCAGCCG
3' ss Score
5.66
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAGACACGTATTTTGTGCCAGATGCACCAAACTTGGGTTCAAAATGGCCATCCATATATGAAACACACCCAAGATACTTCAGTGAATTCACTTCTCAGAGCCCTGACTCCTCCCAGCTTCGGTTTGGAAAACTATCAGCCATTGGTTTTAATCCTGCTGTACTACCAACCCATCAGCTCATTCATGAGGGAGCTTCCTGGAGAAATCCCAGTGGAAAATATCATGGCATCGAGTATCCCAGATTCGATGCTCTACCTCCATCATCCACTGGCCAGGGTGAGTGTAATCCACAAGGACAATCAGGAACCAAACATCATAACTACTGTGGAGAACATGAAGGCAATCTCCCCCATCATCATTCATCCTACTCAATAGACTCCATACCGAATAGAGAGAAAAGAAGGAGTGGAGATGTGAACCTTGTAGAACCTTCTCTGGAGTTCTCTAAAGACTCCTTTCTACCCAGGACATCGGAGAACGTGTCAGTGGAAAGCACAGAG
Seq A exon
CCGATTGGTTGTCCCATTGAAATAGTTGAGGTACCCCAAGGGAGTAACAAGAACCTGGCCTCCTTTTGTAACAAAGTAAAAAA
Seq C2 exon
GATAAGAGAATCGTACCATGCAAGTGACATTAATTCCAATTCTGGGAAGATCTGGGCCATCACCACAGCCTATCCATCTCGGCTCTTCGCTGACACCAAATTCAGAGTAAAAATTTCTATTGATAACTCAGCCCAACTCCTCCTTCTTATGCCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-'8-14,'8-13,9-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.668 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(32.3=57.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGGAGAACGTGTCAGTGG
R:
AAGGAGGAGTTGGGCTGAGTT
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types