GgaEX1044162 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23439154-23440390:+
Coord C1 exon
chr7:23439154-23439286
Coord A exon
chr7:23439695-23439730
Coord C2 exon
chr7:23440233-23440390
Length
36 bp
Sequences
Splice sites
3' ss Seq
TAGTATCTTTATTTTTGCAGGTG
3' ss Score
8.37
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTGTAGCTTCATTTCTGGAGAGCAAGTATGTTGAAGATGACTCAAGAAACTGTGGTGTATTCAAAGTAAATAGAACAATTTTTCCAGCACACTGCAATGAAAAGCGTGAATGGATATGCAAAATACCAAAAG
Seq A exon
GTGTTAAACCAAAAAATCCAGATTGGTACATAGCTG
Seq C2 exon
AACTGCCATGGTCGTACTACCAAGGAGCAGAGTATCTTTTTCATGTGAATCCTACAGACTGGGACACCTATGAGTTCATTTGTGTCTGGCTTCGTAGTGAAATGGCAACAATACATTCTGCTGATGAGCAAGCATTTATTGAAAATAAAATTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'15-19,'15-17,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.9=73.2)
A:
NO
C2:
PF0005916=Lectin_C=PU(32.4=67.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACTGCAATGAAAAGCGT
R:
AGGTGTCCCAGTCTGTAGGAT
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]