BtaEX6009579 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36469926-36471582:+
Coord C1 exon
chr2:36469926-36470058
Coord A exon
chr2:36470635-36470670
Coord C2 exon
chr2:36471425-36471582
Length
36 bp
Sequences
Splice sites
3' ss Seq
GGCTTGCTTTTACTTTACAGATG
3' ss Score
9.18
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGTCTCTTCATTTTTAGACAATTCTTATTTTGGAGAAGATGCAAGAAATTGTGCTGTTTATAAGGCAAATAAAACGTTGCTACCCTCATACTGTGGTTCCAAACGTGAATGGATATGCAAAATTCCAAGAG
Seq A exon
ATGTGAGACCCAAGGTTCCACCCTGGTATCAGTATG
Seq C2 exon
ATGCACCCTGGCTCTTTTATCAGGATGCAGAGTACCTTTTTCATATTTCTGCCTCAGAATGGTCCTCCTTTGAGTTTGTCTGTGGCTGGCTGCGCAGTGATATTCTCACTATTCATTCTGCACACGAACAAGAATTCATCCACAGCAAAATAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'17-25,'17-21,18-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.9=91.1)
A:
NO
C2:
PF0005916=Lectin_C=PU(32.1=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGCTACCCTCATACTGTGG
R:
AAGGAGGACCATTCTGAGGCA
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]