HsaEX0047992 @ hg19
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:9042]
Coordinates
chr2:160832579-160833927:-
Coord C1 exon
chr2:160833795-160833927
Coord A exon
chr2:160833196-160833231
Coord C2 exon
chr2:160832579-160832736
Length
36 bp
Sequences
Splice sites
3' ss Seq
GATTTGCTTTCACTTTGCAGATG
3' ss Score
10.33
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTGTCTCTTCGTTTTTAGACAACACTTATTTTGGAGAAGATGCAAGAAACTGTGCTGTTTATAAGGCAAACAAAACATTGCTGCCCTTACACTGTGGTTCCAAACGTGAATGGATATGCAAAATCCCAAGAG
Seq A exon
ATGTGAAACCCAAGATTCCGTTCTGGTACCAGTACG
Seq C2 exon
ATGTACCCTGGCTCTTTTATCAGGATGCAGAATACCTTTTTCATACCTTTGCCTCAGAATGGTTGAACTTTGAGTTTGTCTGTAGCTGGCTGCACAGTGATCTTCTCACAATTCATTCTGCACATGAGCAAGAATTCATCCACAGCAAAATAAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.9=91.1)
A:
NO
C2:
PF0005916=Lectin_C=PU(31.8=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGCCCTTACACTGTGG
R:
TCAACCATTCTGAGGCAAAGGT
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)