MmuEX0035529 @ mm9
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60285440-60287023:-
Coord C1 exon
chr2:60286891-60287023
Coord A exon
chr2:60286314-60286349
Coord C2 exon
chr2:60285440-60285597
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCTTTTGCTCTGCAGATG
3' ss Score
10.37
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GTTGTCTCTTCATTTTTAGACAATGCTTATTTTGAAGAAGATGCAAAAAATTGTGCTGTGTATAAGGCAAACAAAACATTGTTGCCCTCGAACTGTGCCTCCAAACACGAGTGGATATGCAGAATTCCAAGAG
Seq A exon
ATGTGAGACCCAAGTTTCCAGACTGGTACCAGTACG
Seq C2 exon
ATGCGCCGTGGCTCTTCTATCAGAACGCCGAGTACCTCTTCCACACCCACCCAGCGGAGTGGGCCACCTTTGAGTTTGTCTGCGGCTGGCTGCGAAGTGACTTCCTCACAATTTATTCTGCTCAGGAGCAAGAATTCATCCACAGCAAAATCAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.9=91.1)
A:
NO
C2:
PF0005916=Lectin_C=PU(32.4=67.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTGCCTCCAAACACGA
R:
GACAAACTCAAAGGTGGCCCA
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: