GgaEX1044162 @ galGal4
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
secretory phospholipase A2 receptor precursor [Source:RefSeq peptide;Acc:NP_996866]
Coordinates
chr7:21350580-21351816:+
Coord C1 exon
chr7:21350580-21350712
Coord A exon
chr7:21351121-21351156
Coord C2 exon
chr7:21351659-21351816
Length
36 bp
Sequences
Splice sites
3' ss Seq
TAGTATCTTTATTTTTGCAGGTG
3' ss Score
8.37
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTGTAGCTTCATTTCTGGAGAGCAAGTATGTTGAAGATGACTCAAGAAACTGTGGTGTATTCAAAGTAAATAGAACAATTTTTCCAGCACACTGCAATGAAAAGCGTGAATGGATATGCAAAATACCAAAAG
Seq A exon
GTGTTAAACCAAAAAATCCAGATTGGTACATAGCTG
Seq C2 exon
AACTGCCATGGTCGTACTACCAAGGAGCAGAGTATCTTTTTCATGTGAATCCTACAGACTGGGACACCTATGAGTTCATTTGTGTCTGGCTTCGTAGTGAAATGGCAACAATACATTCTGCTGATGAGCAAGCATTTATTGAAAATAAAATTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'19-21,'19-19,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.9=91.1)
A:
NO
C2:
PF0005916=Lectin_C=PU(32.4=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACTGCAATGAAAAGCGT
R:
AGGTGTCCCAGTCTGTAGGAT
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]