DreEX0006872 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11091302-11094817:+
Coord C1 exon
chr11:11091302-11091434
Coord A exon
chr11:11091542-11091577
Coord C2 exon
chr11:11094657-11094817
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATGATTTTTGATTTCCACAGGTG
3' ss Score
10.8
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GTGGTGACATCGTTCATTGAGGATATGAATGAAGCAGACTCTCACATGTGTGCTGCGTACAGTGACCTCACAAACACTCTCACTCCTCACTCCTGTGACTCCAAATATGAATGGATTTGCAAAGTGCCTCGAG
Seq A exon
GTGTGGAGCTGGTCAAGCCATACTGGTACAGCGACC
Seq C2 exon
AACATGCACCATGGTTCTTTTTCCACGAAGCTGAATATTACTTTGCCAGTAAGCAGTTTCCCTGGCAGTCTGTCTCTTTCACCTGCAAGATGATGGGCGCTGATCTGCTCTCTATCCACTCTAGTGAAGAACTGGACTTTGTCAAAGGACACATTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'18-17,'18-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(36.9=91.1)
A:
NO
C2:
PF0005916=Lectin_C=PU(34.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTGCAAAGTGCCTCGA
R:
GCCCATCATCTTGCAGGTGAA
Band lengths:
120-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]