GgaEX1048063 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6610721-6618307:-
Coord C1 exon
chr8:6618202-6618307
Coord A exon
chr8:6617599-6617691
Coord C2 exon
chr8:6610721-6610826
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTTTCTCCCCAGGTA
3' ss Score
13.6
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
CTCTCTAGAATCTGAAGATTTGGCCGTTCATTTGTATCCAGGAGCAGTTACTATTCAAGGCGTTCTCAGAAGGAAGACTTTGTTGAAAGAAGGCAAAAAACCCACA
Seq A exon
GTAGCATCTTGGACAAAATACTGGGTAGCATTGTGTGGAACCCAACTCTTTTACTATGCTGCAAAATCTCTGAAGGCCACAGAGAGAAAACAT
Seq C2 exon
TTCAAATCCACCCCGAGCAAGAATGTGTCAGTCGTGGGCTGGATGGTGATGATGGCAGACGACCCTGAACATCCAGATCTCTTCTTATTGACAGATTCGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'26-31,'26-30,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(17.0=52.8)
A:
PF0016924=PH=FE(26.8=100)
C2:
PF0016924=PH=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGTTCATTTGTATCCAGG
R:
GAGATCTGGATGTTCAGGGTCG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]