RnoEX6044898 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74428170-74436103:-
Coord C1 exon
chr13:74435998-74436103
Coord A exon
chr13:74433733-74433825
Coord C2 exon
chr13:74428170-74428275
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTATCCTCCCCAGGTA
3' ss Score
10.78
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TTCTGCAGAGTCGGAAGACTTGGCGGTGCACCTGTACCCAGGGGCTGTTACTATTCAAGGCGTTCTCAGGAGGAAAACTTTGTTAAAAGAAGGCAAAAAACCCACA
Seq A exon
GTAGCATCTTGGACAAAGTATTGGGCAGCCTTGTGTGGAACACAGCTTTTTTACTATCCTGCCAAATCTCTGAAGGCTACAGAAAGAAAGCAC
Seq C2 exon
TTCAAATCAACGTCAAATAAGAATGTGTCTGTGGTGGGCTGGATGGTGATGATGGCCGATGATCCAGAGCATCCAGACCTCTTTCTGCTGACTGACTCCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736-'38-34,'38-32,40-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(17.0=52.8)
A:
PF0016924=PH=FE(26.8=100)
C2:
PF0016924=PH=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCCAGGGGCTGTTACT
R:
TCTCGGAGTCAGTCAGCAGAA
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]