HsaEX0052100 @ hg19
Exon Skipping
Gene
ENSG00000116191 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:30279]
Coordinates
chr1:178863054-178871346:+
Coord C1 exon
chr1:178863054-178863159
Coord A exon
chr1:178866799-178866891
Coord C2 exon
chr1:178871241-178871346
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTTGTCCTATCCAGGTA
3' ss Score
11.07
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTCTGCAGAATCAGAAGATTTGGCAGTACATTTATATCCAGGAGCTGTTACTATTCAAGGTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAAAAGCCTACA
Seq A exon
GTAGCATCTTGGACAAAATATTGGGCAGCTTTGTGTGGGACACAGCTTTTTTACTATGCTGCCAAATCTCTAAAGGCTACCGAAAGAAAACAT
Seq C2 exon
TTCAAATCAACATCCAATAAGAACGTATCTGTGATAGGATGGATGGTGATGATGGCTGATGACCCTGAACATCCTGATCTCTTCCTGCTGACTGACTCTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116191-'24-27,'24-26,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF154131=PH_11=PU(24.3=47.2)
A:
PF154131=PH_11=FE(44.3=100)
C2:
PF154131=PH_11=PD(30.0=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAATCAGAAGATTTGGCAGT
R:
GGGTCATCAGCCATCATCACC
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)