MmuEX6028498 @ mm10
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:156813438-156819918:-
Coord C1 exon
chr1:156819813-156819918
Coord A exon
chr1:156817741-156817833
Coord C2 exon
chr1:156813438-156813543
Length
93 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTTTATCCTCCACAGGTA
3' ss Score
11.35
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CTCTGCGGAGTCGGAAGATTTGGCGGTGCATCTGTACCCCGGAGCTGTTACTATTCAAGGTGTGCTCCGGAGGAAAACCTTGCTAAAAGAAGGCAAGAAACCCACA
Seq A exon
GTAGCATCTTGGACAAAGTATTGGGCAGCCTTGTGTGGAACACAGCTTTTTTACTATGCCGCCAAATCTCTGAAGGCTACAGAAAGAAAGCAT
Seq C2 exon
TTCAAATCAACGTCAAATAAGAATGTGTCTGTGGTGGGCTGGATGGTGATGATGGCTGACGACCCAGAGCATCCAGACCTCTTTCTGCTGACTGACTCCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-'45-53,'45-48,50-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.042 C2=0.029
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(17.0=52.8)
A:
PF0016924=PH=FE(26.8=100)
C2:
PF0016924=PH=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTTGGCGGTGCATCTGT
R:
AAGAGGTCTGGATGCTCTGGG
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types