GgaEX1051155 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21125235-21127884:+
Coord C1 exon
chr7:21125235-21125339
Coord A exon
chr7:21126115-21126385
Coord C2 exon
chr7:21126728-21127884
Length
271 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCCTTCTCAGAAC
3' ss Score
11.8
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTTGGAGGTCAAGACATATTTATGACAGAAGAGCAGAAGAAATACTACAATGCAATGAAAAAGCTGGGATCCAAAAAACCACAAAAGCCTATACCAAGACCAGGG
Seq A exon
AACAAGTTTCAAGGCATGGTCTTTGATTTTGTGACACAGCAAGTATTCGACATTAGCATCATGATTCTTATCTGTCTTAACATGGTTACCATGATGGTAGAAACTGATGACCAGAGTAAAGAAATGGAAAATATTTTATACTGGATAAACTTGGTGTTCATTGTCCTTTTCACTGGAGAATGTGTCCTGAAATTAATTTCACTCCGCCATTATTATTTCACTATAGGCTGGAATATTTTTGATTTTGTAGTTGTCATTCTCTCAATAGTAG
Seq C2 exon
GTATGTTCTTAGCTGAGATGATTGAAAAGTATTTTGTGTCCCCTACTTTGTTCCGAGTCATCCGACTTGCCAGAATAGGCCGCATTCTGCGTCTCATTAAAGGCGCAAAGGGAATCCGCACTCTGCTTTTTGCTCTGATGATGTCTCTTCCTGCTTTGTTCAACATTGGCCTGCTGCTCTTCTTGGTCATGTTTATCTATGCGATATTTGGCATGTCCAACTTTGCCTACGTTAAGAGGGAAGCTGGGATTGATGACATGTTCAACTTTGAAACATTTGGCAACAGCATGATCTGCCTATTTCAAATTACCACATCTGCTGGCTGGGATGGCTTGTTAGCCCCAATTCTTAACAGTGGGGAGCCGGACTGTGACCCTAACAAAGCTCACCCAGGGAGCTCTGTTAAAGGTGACTGTGGCAACCCTTCAGTTGGGATTTTCTTCTTTGTCAGCTACATCATCATATCCTTTTTGGTGGTGGTGAACATGTACATTGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=43.3),PF0061222=IQ=WD(100=5.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGAAAAAGCTGGGATCCA
R:
TCCCAGCTTCCCTCTTAACGT
Band lengths:
303-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]