GgaEX1051173 @ galGal3
Exon Skipping
Gene
ENSGALG00000000252 | Q8AV15_CHICK
Description
NA
Coordinates
chr27:1539284-1541592:-
Coord C1 exon
chr27:1541314-1541592
Coord A exon
chr27:1540021-1540074
Coord C2 exon
chr27:1539284-1539421
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCCAATCCCCACAGGCG
3' ss Score
10.82
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGTGGTAAATGCCTTGTTGGGTGCCATCCCCTCCATCATGAACGTCCTGCTGGTCTGCCTCATCTTCTGGCTGATATTCAGCATCATGGGGGTGAACCTCTTCGCAGGGAAGTACTACCGATGCGTCAACACCACCACGGGGGACCTCTTTGACATCAGCGTGGTGAACAATAAGAGCGACTGCATGGCTCTCCTCCACACCAACGAGGTCAGATGGGTCAACGTCAAAGTCAACTTCGACAACGTGGGCTTGGGATACCTGTCCTTGCTGCAGGTG
Seq A exon
GCGACCTTCAAAGGTTGGATGGACATCATGTACGCTGCTGTGGACTCACGTGAG
Seq C2 exon
ATTGAAGAGCAGCCAGTGTACGAGATCAACCTCTACATGTACATCTACTTTGTCATCTTCATCATCTTTGGAGCTTTCTTCACCCTCAACCTCTTCATCGGTGTCATCATTGACAACTTCAACCAGCAGAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(52.9=100)
A:
PF0052026=Ion_trans=PU(31.5=94.4),PF116463=DUF3258=PU(16.0=72.2)
C2:
PF0052026=Ion_trans=PD(15.4=76.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGTGGGCTTGGGATAC
R:
ACCGATGAAGAGGTTGAGGGT
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]