DreEX6067604 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4854082-4855882:+
Coord C1 exon
chr12:4854082-4854360
Coord A exon
chr12:4855093-4855146
Coord C2 exon
chr12:4855745-4855882
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAGTACCTCTTTCCACATAGGCC
3' ss Score
6.91
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGGTAGTGAATGCACTTGTAGGTGCCATTCCCTCTATTTTTAACGTGCTCCTGGTGTGTCTGATATTCTGGCTCATCTTCAGCATTATGGGGGTCAATCTGTTTGCCGGAAAATTCTACCACTGCATCAACACCACCACAGAGGAACGGATCCCCATGGATGTAGTCAACAACAAGAGTGACTGCATGGCACTGATGTACACCAACGAGGTGCGATGGGTCAATGTCAAGGTCAACTACGACAACGTGGGACTCGGCTACCTCTCTCTGCTGCAGATT
Seq A exon
GCCACATTCAAAGGCTGGATGGATATCATGTATGCTGCAGTGGATTCTAGAGAG
Seq C2 exon
GTGGATGAGCAGCCATCATATGAAATCAACCTTTACATGTACCTTTATTTTGTTATTTTCATCATTTTTGGCTCCTTTTTTACTCTCAACCTCTTTATTGGTGTCATCATTGACAACTTCAATCAGCAAAAATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.4=100)
A:
PF0052026=Ion_trans=FE(7.5=100)
C2:
PF0052026=Ion_trans=PD(15.4=68.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAAGAGTGACTGCATGGC
R:
TCATATGATGGCTGCTCATCCAC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]