RnoEX0078537 @ rn6
Exon Skipping
Gene
ENSRNOG00000053122 | Scn1a
Description
sodium voltage-gated channel alpha subunit 1 [Source:RGD Symbol;Acc:69364]
Coordinates
chr3:52404881-52408953:-
Coord C1 exon
chr3:52408672-52408953
Coord A exon
chr3:52406543-52406596
Coord C2 exon
chr3:52404881-52405018
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATGCATGTCCTTTCCAACAGGCG
3' ss Score
9.61
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGGTTGTGAATGCCCTGTTAGGAGCAATTCCATCCATCATGAATGTGCTTCTGGTTTGCCTTATATTCTGGCTAATTTTCAGCATCATGGGCGTAAATTTGTTTGCTGGCAAATTCTACCACTGTGTTAACACCACAACTGGTGACACATTTGAGATCACCGAAGTCAATAATCATTCTGATTGCCTAAAACTAATAGAAAGAAATGAGACTGCCCGGTGGAAAAATGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTT
Seq A exon
GCGACGTTTAAGGGTTGGATGGATATCATGTATGCAGCAGTTGATTCCAGAAAT
Seq C2 exon
GTGGAACTGCAGCCTAAGTATGAGGAAAGCCTGTACATGTACCTGTACTTCGTCATCTTCATCATCTTCGGCTCGTTCTTCACTCTAAATCTATTCATCGGTGTCATCATAGACAACTTCAACCAGCAGAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053122-'32-34,'32-33,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.6=100)
A:
PF0052026=Ion_trans=FE(7.4=100)
C2:
PF0052026=Ion_trans=PD(15.3=76.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCGGTGGAAAAATGTGAA
R:
ACGAGCCGAAGATGATGAAGA
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]