DreEX0064507 @ danRer10
Exon Skipping
Gene
ENSDARG00000086819 | scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:ZFIN;Acc:ZDB-GENE-040426-751]
Coordinates
chr9:50217829-50220824:-
Coord C1 exon
chr9:50220552-50220824
Coord A exon
chr9:50218054-50218107
Coord C2 exon
chr9:50217829-50217966
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTATTTTATTTCAGGCA
3' ss Score
8.17
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGGTTGTGAACGCTCTTCTGGGCGCCATTCCCTCCATCATGAACGTCCTGCTCGTCTGCCTCATCTTCTGGCTCATTTTCAGCATTGTGGGTGTCAACTTCTTCGCTGGGAAGTTTTCTGAATGTATAAACATAACCACGGAGCAGCGCCTGCCTGTCTCAGAGGTCTATAACAAGACAGACTGTGAAAGAATGGGGAAAGGAGTCCGCTGGAGAAATGTGATCATTAACTTTGACAATGTTGGGAATGGATACCTGGCCCTGCTGCAAGTG
Seq A exon
GCAACATTTAAAGGGTGGATGCCTATTATGTATGCAGCGGTAGACTCTCGCAAT
Seq C2 exon
CCAGAAGAACAGCCGGAGTATGAGGTGAATCTGTACATGTACCTCTATTTTGTCATCTTCATCATCCTTGGAGCCTTCTTCACATTAAACCTCTTCATTGGCGTCATCATTGACAACTTCAATCAGCAGAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086819-'30-30,'30-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.3=100)
A:
PF0052026=Ion_trans=FE(8.0=100)
C2:
PF0052026=Ion_trans=PD(15.9=76.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGAATGGATACCTGGCC
R:
TGATGACGCCAATGAAGAGGT
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]