DmeEX6002878 @ dm6

Exon Skipping

Gene

FBgn0264255 | para

Description

NA

Coordinates

chrX:16486341-16488045:-

Coord C1 exon

chrX:16487883-16488045

Coord A exon

chrX:16486718-16486905

Coord C2 exon

chrX:16486341-16486584

Length

188 bp

Sequences

Splice sites

3' ss Seq

TAATGCCAAACCATCGACAGATC

3' ss Score

3.49

5' ss Seq

GTGGTGAGT

5' ss Score

8.95

Exon sequences

Seq C1 exon

CTGCGTGTATTCAAACTGGCCAAGTCTTGGCCCACACTTAATTTACTCATTTCGATTATGGGACGCACCATGGGCGCTTTGGGTAATCTGACATTTGTACTTTGCATTATCATCTTCATCTTTGCGGTGATGGGAATGCAACTGTTCGGAAAGAATTATCATG

Seq A exon

ATCACAAGGACCGCTTTCCGGATGGCGACCTGCCGCGCTGGAACTTCACCGACTTTATGCACAGCTTCATGATCGTGTTCCGGGTGCTCTGCGGAGAATGGATCGAGTCCATGTGGGACTGCATGTACGTGGGCGATGTCTCGTGCATTCCCTTCTTCTTGGCCACCGTTGTCATCGGCAATCTTGTG

Seq C2 exon

GTACTTAACCTTTTCTTAGCCTTGCTTTTGTCCAATTTTGGCTCATCTAGCTTATCAGCGCCGACTGCCGATAACGATACGAATAAAATAGCCGAGGCCTTCAATCGAATTGGCCGATTTAAAAGTTGGGTTAAGCGTAATATTGCTGATTGTTTCAAGTTAATACGTAACAAATTGACAAATCAAATAAGTGATCAACCATCAGGTGAGAGGACCAACCAGATCAGTTGGATTTGGAGCGAAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0264255-'28-30,'28-29,29-30=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.057

Domain overlap (PFAM):

C1:

PF0052026=Ion_trans=FE(28.7=100)

A:

PF0052026=Ion_trans=PD(22.2=75.0)

C2:

PF0052026=Ion_trans=PD(4.3=9.8),PF065128=Na_trans_assoc=PU(22.5=70.7)

Main Inclusion Isoform:

FBpp0303597

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292723, FBpp0309614, FBpp0311217

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

chr2:165999723-165999776

HIGH PSI

HsaEX6016412

(SCN1A)

Human

(hg19)