RnoEX6050165 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94511092-94512003:-
Coord C1 exon
chr10:94511725-94512003
Coord A exon
chr10:94511432-94511485
Coord C2 exon
chr10:94511092-94511229
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCCACGATCTCTCAGGCC
3' ss Score
7.81
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGTGGTGAACGCCCTCCTGGGAGCTATCCCCTCCATCATGAACGTCCTCCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGGGTCAACTTGTTTGCTGGAAAGTTCTACTACTGCGTCAACACCACCACCTCTGAGAGATTCGACATCTCGGTGGTCAACAACAAGTCCGAGTGTGAGAGCCTCATGTATACAGGCCAGGTCCGCTGGATGAATGTCAAGGTCAACTACGACAACGTGGGTCTGGGCTATCTCTCCCTCCTTCAGGTG
Seq A exon
GCCACATTCAAGGGTTGGATGGATATCATGTATGCAGCTGTGGACTCCCGGGAG
Seq C2 exon
AAAGAGGAGCAGCCAGACTATGAGGTGAACCTCTACATGTACCTCTACTTCGTCATCTTCATCATCTTCGGCTCCTTCTTCACCCTCAACCTCTTCATCGGTGTCATCATCGACAACTTCAACCAACAGAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'29-25,'29-24,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.4=100)
A:
PF0052026=Ion_trans=FE(7.5=100)
C2:
PF0052026=Ion_trans=PD(15.4=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCAACAACAAGTCCGA
R:
CCTCATAGTCTGGCTGCTCCT
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]