GgaEX1051173 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1632974-1635282:-
Coord C1 exon
chr27:1635004-1635282
Coord A exon
chr27:1633711-1633764
Coord C2 exon
chr27:1632974-1633111
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCCAATCCCCACAGGCG
3' ss Score
10.82
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGTGGTAAATGCCTTGTTGGGTGCCATCCCCTCCATCATGAACGTCCTGCTGGTCTGCCTCATCTTCTGGCTGATATTCAGCATCATGGGGGTGAACCTCTTCGCAGGGAAGTACTACCGATGCGTCAACACCACCACGGGGGACCTCTTTGACATCAGCGTGGTGAACAATAAGAGCGACTGCATGGCTCTCCTCCACACCAACGAGGTCAGATGGGTCAACGTCAAAGTCAACTTCGACAACGTGGGCTTGGGATACCTGTCCTTGCTGCAGGTG
Seq A exon
GCGACCTTCAAAGGTTGGATGGACATCATGTACGCTGCTGTGGACTCACGTGAG
Seq C2 exon
ATTGAAGAGCAGCCAGTGTACGAGATCAACCTCTACATGTACATCTACTTTGTCATCTTCATCATCTTTGGAGCTTTCTTCACCCTCAACCTCTTCATCGGTGTCATCATTGACAACTTCAACCAGCAGAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.4=100)
A:
PF0052026=Ion_trans=FE(7.5=100)
C2:
PF0052026=Ion_trans=PD(15.4=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGTGGGCTTGGGATAC
R:
ACCGATGAAGAGGTTGAGGGT
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]