DreEX0064532 @ danRer10
Exon Skipping
Gene
ENSDARG00000034588 | scn4ab
Description
sodium channel, voltage-gated, type IV, alpha, b [Source:ZFIN;Acc:ZDB-GENE-051201-1]
Coordinates
chr3:22176447-22179447:+
Coord C1 exon
chr3:22176447-22176728
Coord A exon
chr3:22176823-22176876
Coord C2 exon
chr3:22179306-22179447
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTGTTTGGTTTCTAGGCA
3' ss Score
8.44
5' ss Seq
GCCGTACGT
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTGGTGGTGAACGCCCTGGTGGGTGCAATTCCCTCTATCTTCAACGTTCTCCTGGTGTGCCTGATCTTTTGGCTCATCTTCAGCATCATGGGAGTCAACCTTTTTGCTGGAAAGTTCTACTACTGCTTCAATGAAACATCTGAGGAGGTCTTCGATCACAATGTGGTCAACAATAAGACTGACTGCTATGAGCTTATGGAGTTTCATCCCGAAGTGCGATGGATGAACGGAAAGATCAATTTTGATAATGTGGGCATGGGCTACCTCGCCCTACTGCAAGTG
Seq A exon
GCAACATTTAAAGGATGGATGGACATCATGTATAGTGCTGTGGATTCACGTGCC
Seq C2 exon
ATTGAATCGCAGCCAGTATATGAGGCAAACCTCTACATGTACATTTACTTTGTCATCTTCATCATTTTCGGCTCATTCTTCACCCTCAATCTGTTCATCGGCGTAATCATTGACAATTTCAACCAACAAAAGGCAAAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034588-'21-23,'21-22,22-23
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.6=100)
A:
PF0052026=Ion_trans=FE(7.4=100)
C2:
PF0052026=Ion_trans=PD(15.3=72.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGTGGGCATGGGCTACCT
R:
ACGCCGATGAACAGATTGAGG
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]