GgaEX1051259 @ galGal3
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
NA
Coordinates
chr1:70761397-70803470:-
Coord C1 exon
chr1:70803354-70803470
Coord A exon
chr1:70783293-70783415
Coord C2 exon
chr1:70761397-70761513
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTTCATTCCTTGCAGATA
3' ss Score
12.27
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAACATGTGCTGTCAATAATGGAGGCTGTGATCGGACTTGCAAGGATACCGCGACAGGGGTACGATGCAGTTGCCCAGTTGGATTTACCCTGCAGCCTGATGGGAAAACGTGCAAAG
Seq A exon
ATATTGATGAGTGCTTGGTAAACAATGGTGGCTGTGACCATTTCTGCCGAAACACAGTTGGCAGCTTTGAATGCAGCTGCCAGAAAGGCTATAAACTACTCACAGATGAACGGACCTGTCAAG
Seq C2 exon
ATATAGACGAGTGTTCCTTTGAGAGGACCTGTGATCACACCTGCATCAACTACCCTGGAAGCTTCGAATGTCTCTGCCATAAAGGCTACACCTTGTACGGACTGACGCACTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATGTGCTGTCAATAATGGAGG
R:
CTCCACAGTGCGTCAGTCC
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]