GgaEX1051604 @ galGal4
Exon Skipping
Gene
ENSGALG00000002643 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr8:3692054-3694589:+
Coord C1 exon
chr8:3692054-3692403
Coord A exon
chr8:3692531-3692621
Coord C2 exon
chr8:3694209-3694589
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTCTGGCACGCAGGGC
3' ss Score
7.95
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CCCGCACAGGATCCGGGAGCCACGCACCTTGGTTCCGCTCTGCCTGGTGTAGGTCCACCTCATCCTGTTCCGTCCTCTCTCGGTTGCTGCCGCAGACATGGTGAGTTGGAGGGCTCTGGGTGGCCGCACAGCAGCCTGGCCCCTCGCTGGGGTTTCAGCCTCCAGCTGGCAGCGGGCTCCTGGAAGTGGGGAGCGCAGCGGGGCAGGATGCGGGCTGACAGCGGGGCTGGGTCAGGAGGGGAAGAGACTGAGGGGAGGGAGCGATGCTCTGTGGCTTGCAGGAAGTGTGAGCAGAGCTGCCTGCCCAGAGCGAGGGCCAGGCACAGCGGGCACCCTGCAGCACCGGCGTG
Seq A exon
GGCACCCCTGTGGGACAGCACTGCGCTCGGAGGATGTGGGCTCTCAGCTCTTGTGGCGTCTGCTGCCTGGGCATCGCTGCCTTCACATGTG
Seq C2 exon
GCGTGGTGATGCAGGTGGGGGCCTGGACGTACAACTACAGTGAGAAGGACTATGAGTGGGACGAGGCCAGGGCATACTGCAAGACGTTCTTCACCGACCTGGTGGCCATCCAGAACAAGGAGGAGATCGAGTACCTCAATCGCACCCTGCCCTATCATAACAAATACTACTGGATTGGCATCCGCAAGCAGAAAGGTACCTGGACCTGGGTGGGCACCAACAAGACACTGACGAAGGAGGCAACCAACTGGGCCGCTAGGGAGCCCAACAACCGCGGGTCCAACCAGGACTGCGTGGAGATCTACATCAAGCGGCCGTCAGAGGCAGGCAAGTGGAACGATGAGCCTTGTACAAAGAAGAAGAAGGCGCTGTGCTACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005916=Lectin_C=WD(100=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGTGTGAGCAGAGCTG
R:
GTCGGTGAAGAACGTCTTGCA
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]