MmuEX6028835 @ mm10
Exon Skipping
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:164115264-164126613:+
Coord C1 exon
chr1:164115264-164115389
Coord A exon
chr1:164123702-164123792
Coord C2 exon
chr1:164126227-164126613
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCTTTTTTGTTTCAGGCT
3' ss Score
11.77
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACATTTCTGGAAAGCGAATAGGAAGTTGTTTTGTTAGGCAGCCTGACATCAACGGGAGGCAGCAAAAGTATAAGAAGTGTGGTTTTGGCTAGAGGGAAGAAAGCCAGACGGATCAGAGAGGACATG
Seq A exon
GCTGGCTGCCCAAAAGGTTCCTGGACGCCAAGACTCCGGAGTGTGATCCTGGGAGGGGCTCAACTCATCTGGTTCAGTGCTTTGATCTCTG
Seq C2 exon
AGCTTGTAAATCAGAAGGAAGTGGCTGCGTGGACCTATAACTACAGCACAAAGGCATACTCATGGAATAACTCACGGGTGTTCTGTAGGAGGCACTTCACAGACTTAGTGGCCATCCAGAATAAGAATGAAATCGCTCACCTCAATGACGTCATCCCATTCTTCAACTCTTACTACTGGATTGGTATCCGAAAGATCAACAATAAGTGGACCTGGGTGGGAACAAATAAGACACTCACGGAGGAGGCTGAGAACTGGGCCGACAACGAGCCCAACAACAAGAAGAACAATCAGGACTGTGTGGAGATCTACATCAAGAGTAACTCGGCCCCTGGCAAGTGGAATGATGAACCCTGTTTTAAACGAAAGCGGGCCCTGTGCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580-'0-11,'0-0,1-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=WD(100=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGGAGGCAGCAAAAGTA
R:
CCTCCTACAGAACACCCGTGA
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types