HsaEX0057037 @ hg38
Exon Skipping
Gene
ENSG00000174175 | SELP
Description
selectin P [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr1:169617028-169630112:-
Coord C1 exon
chr1:169630072-169630112
Coord A exon
chr1:169619129-169619219
Coord C2 exon
chr1:169617028-169617414
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCTTCTTGTTTCAGGCC
3' ss Score
11.56
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
TGGGCAGAAGGCAGAAAACCAGCAGAGTCACAGAGGAGATG
Seq A exon
GCCAACTGCCAAATAGCCATCTTGTACCAGAGATTCCAGAGAGTGGTCTTTGGAATTTCCCAACTCCTTTGCTTCAGTGCCCTGATCTCTG
Seq C2 exon
AACTAACAAACCAGAAAGAAGTGGCAGCATGGACTTATCATTACAGCACAAAAGCATACTCATGGAATATTTCCCGTAAATACTGCCAGAATCGCTACACAGACTTAGTGGCCATCCAGAATAAAAATGAAATTGATTACCTCAATAAGGTCCTACCCTACTACAGCTCCTACTACTGGATTGGGATCCGAAAGAACAATAAGACATGGACATGGGTGGGAACCAAAAAGGCTCTCACCAACGAGGCTGAGAACTGGGCTGATAATGAACCTAACAACAAAAGGAACAACGAGGACTGCGTGGAGATATACATCAAGAGTCCGTCAGCCCCTGGCAAGTGGAATGATGAGCACTGCTTGAAGAAAAAGCACGCATTGTGTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174175-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=WD(100=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGCAGAAAACCAGCA
R:
TCATTTTTATTCTGGATGGCCACT
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development