RnoEX6045154 @ rn6
Exon Skipping
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82429063-82441504:+
Coord C1 exon
chr13:82429063-82429077
Coord A exon
chr13:82438697-82438787
Coord C2 exon
chr13:82441118-82441504
Length
91 bp
Sequences
Splice sites
3' ss Seq
CGTTTTCTTTTTTGTTTCAGGCC
3' ss Score
11.46
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTCGGAGAGGACATG
Seq A exon
GCCGGCTGCCCAAAAGGTTCTTGGAAGCCAAGACTCCGGAGTGTGGTCCTGGGAGCCGCTCAGCTTGTCTGGCTCAGTGCTTTGATCTCTG
Seq C2 exon
AGCTTGTAAATCAGAAGGAAGTGGCCGCGTGGACCTATAACTACAGCACGAAAGCATACTCATGGAATAACTCACGGGCATTCTGCAAGAGGCACTTCACAGACTTAGTGGCCATCCAGAACAAGAATGAAATCGCTCACCTCAATGACGTCATCCCATACGTCAACTCTTACTACTGGATTGGTATCCGAAAGATCAACAATAAGTGGACCTGGGTGGGAACCAATAAGACTCTCACGGCGGAGGCTGAGAACTGGGCAGACAACGAGCCCAACAACAAGAGGAACAACCAGGACTGTGTGGAGATCTACATCAAGAGTAATTCGGCCCCTGGCAAGTGGAATGATGAGCCCTGCTTTAAACGAAAGCGGGCCCTGTGCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=WD(100=86.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]