GgaEX1051616 @ galGal4
Exon Skipping
Gene
ENSGALG00000013722 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr12:3223424-3223871:+
Coord C1 exon
chr12:3223424-3223524
Coord A exon
chr12:3223592-3223661
Coord C2 exon
chr12:3223727-3223871
Length
70 bp
Sequences
Splice sites
3' ss Seq
GATGCTTCCCCTGCCCGCAGGTG
3' ss Score
12.5
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GCAGCGCAGCCTGGTGAACAAGTGGACGACGTTCCTCAAGGCGCGCCTGGTGTGCGCCGTGCCCGGCACCGACGGCGCCGACACGCACTTTGATGAGCTCC
Seq A exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
Seq C2 exon
CTCCATCTTCCAGGGCTCGGCCGTCTGCGTTTACACCATGGCCGACATCCGCCGGGCGTTCCTGGGCCCCTTTGCGCACAAGGAGGGCCCCAACTACCAGTGGGTGCCATACCAGGCGCGCGTGCCGTACCCCCGCCCGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0140314=Sema=FE(5.3=100)
C2:
PF0140314=Sema=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAAGTGGACGACGTTCC
R:
TAGTTGGGGCCCTCCTTGTG
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]