RnoEX6037475 @ rn6
Exon Skipping
Gene
ENSRNOG00000016512 | Sema3b
Description
semaphorin 3B [Source:RGD Symbol;Acc:1310079]
Coordinates
chr8:116356905-116357421:-
Coord C1 exon
chr8:116357310-116357421
Coord A exon
chr8:116357131-116357200
Coord C2 exon
chr8:116356905-116357049
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGTCTTTCTCTGCAGAGG
3' ss Score
12.06
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AATGACCTGGGTGGCCAGCGGAGCTTGGTCAACAAGTGGACCACATTTCTGAAGGCGCGGCTTGTATGCTCAGTACCTGGAGTTGAGGGTGACACCCACTTTGACCAACTTC
Seq A exon
AGGATGTTTTCCTTTTGTCCTCCCGAGACCGCCAGACACCTTTTCTCTATGCTGTCTTCTCCACCTCCAG
Seq C2 exon
TGGCATCTTCCAGGGCTCTGCTGTGTGCGTGTACAGCATGAACGACGTGCGCCGAGCCTTCTTGGGACCTTTTGCTCACAAAGAGGGGCCTACACATCAGTGGGTGTCCTACCAGGGTCGGGTACCCTACCCAAGACCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016512-'19-14,'19-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.4=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCACATTTCTGAAGGCG
R:
TGTGTAGGCCCCTCTTTGTGA
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]