BtaEX6095184 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010138 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr22:50658151-50658658:-
Coord C1 exon
chr22:50658547-50658658
Coord A exon
chr22:50658374-50658443
Coord C2 exon
chr22:50658151-50658295
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATGTGGTCCCTTCCCTACAGAGG
3' ss Score
9.37
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACGACGTGGGTGGCCAGCGCAGCCTGGTCAACAAGTGGACAACGTTCCTGAAGGCGCGGCTGGTGTGCTCGGTGCCCGGTGCCGAGGGCGATACGAACTTTGACCAGCTCC
Seq A exon
AGGACGTGTTCCTGTTGTCCTCGAGAGATCGCTGGACCCCACTGCTCTATGCTGTCTTCTCCACATCCAG
Seq C2 exon
CAGCATCTTCCAGGGTTCTGCCGTGTGCGTGTACAGCATGAATGATGTACGCCGGGCCTTCCTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCCTACCAGGGACGTGTCCCCTACCCCCGACCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010138-'16-18,'16-17,17-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.4=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTCAACAAGTGGACAA
R:
CTCCTTGTGTGCAAAGGGTCC
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]