GgaEX6047727 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29795487-29795948:-
Coord C1 exon
chrUn_random:29795834-29795948
Coord A exon
chrUn_random:29795697-29795766
Coord C2 exon
chrUn_random:29795487-29795631
Length
70 bp
Sequences
Splice sites
3' ss Seq
GATGCTTCCCCTGCCCGCAGGTG
3' ss Score
12.5
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
AACGACGTGGGCGGGCAGCGCAGCCTGGTGAACAAGTGGACGACGTTCCTCAAGGCGCGCCTGGTGTGCGCCGTGCCCGGCACCGACGGCGCCGACACGCACTTTGATGAGCTCC
Seq A exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
Seq C2 exon
CTCCATCTTCCAGGGCTCGGCCGTCTGCGTTTACACCATGGCCGACATCCGCCGGGCGTTCCTGGGCCCCTTTGCGCACAAGGAGGGCCCCAACTACCAGTGGGTGCCATACCAGGCGCGCGTGCCGTACCCCCGCCCGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-'5-10,'5-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.0=100)
A:
PF0140314=Sema=FE(6.7=100)
C2:
PF0140314=Sema=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAAGTGGACGACGTTCC
R:
TAGTTGGGGCCCTCCTTGTG
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]