GgaEX1056126 @ galGal3
Exon Skipping
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7570117-7571829:+
Coord C1 exon
chr17:7570117-7570245
Coord A exon
chr17:7570661-7570789
Coord C2 exon
chr17:7571701-7571829
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTATGGTAATTTAGAGA
3' ss Score
4.79
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAGTTGTTGCGGAAAATCTAAGGAAAGCTGGATTAACTTCAGATCTTCTGTCAATTTTATGCAACTTTATTCATAATGAGCAGATCTGCCACACTAGCTGTGCAGTTCTCTGGAGCTTGGCTGTGAGTG
Seq A exon
AGAACAATGTAGACCAAGTAATGCTGCAAAGTGCTGTCCCCGTTATCACCGCAGTCATTCAAGAGCACCTCCAGAATGGAGCAGTTCTGAAGTCAGCTTGCTCAGCTTTGTGGGCGCTGTCACTGCAAG
Seq C2 exon
GTTTTTTAACTGAAAATGACTATGAGCCCACAACAGTGCTTCTGATGGATGCACTCAGGATGAACCTGGAAAAACCAATGCTGGTGAATAATACCTGCCTGGCATTAGCAAGCCTTCTAAGACTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGGAAAATCTAAGGAAAGC
R:
AGAAGGCTTGCTAATGCCAGG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]