BtaEX6047289 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104356313-104357319:+
Coord C1 exon
chr11:104356313-104356441
Coord A exon
chr11:104356991-104357119
Coord C2 exon
chr11:104357191-104357319
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCACCCCATCCCGTTGCAGCTA
3' ss Score
9.17
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GACTGGCCACAGACGAGCTGCAGAGGGCCTGGCTGTTTGAGGACATCCTGAAGCGCCTGGACAGCCTCCCCAGGAGCAGGGACATCTGTATCCACGGCCTGAGCCTGCTCTGGGCCCTGCTGGTGGATG
Seq A exon
CTATCATTGTGAACAAGGCCCCCTTGGAGAGAGCCCCGGCTCTCGTCACCGAGATACTGGTCACGTTCCCCAGGGACGCGGAGGTGGCTGAAGCTGGCTGTGCGGTTCTGTGGCTGCTGTCCTTGCTGG
Seq C2 exon
GCTGCATCCGGGAGCAGGAGTGTGCGGAGGTGGTGGACCTGCTCCTGCAGAGCGTACGGCTGTACCAGGACCGAGTCCTGCTGGTGAACAACGCCTACCGCGGGCTGGCCAGCCTCGCCAAGGTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-'17-19,'17-17,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGAGCTGCAGAGGG
R:
GTAGGCGTTGTTCACCAGCAG
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]